Experiment ID: 1225

Field Description
nameimpaired gut microbiota-mediated short-chain fatty acid production precedes morbidity and mortality in people with hiv (nihms-1948184) - gemini-2.0-flash
proj_idnihms-1948184
sraprjna994573
date_of_upload15/10/2025 20:15
doi10.1016/j.celrep.2023.113336
modelgemini-2.0-flash

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN human immunodeficiency virus infectious disease0.500000
LOWER IN antiretroviral therapy0.500000
antiretroviral therapy0.500000
human immunodeficiency virus infectious disease0.333333
human aged stage0.250000
human middle aged stage0.250000
amsterdam0.200000
25-44 year-old human stage0.200000
human adult stage0.023256
male0.020000
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
feces0.002294
Exp. ID User ID Description Date Region Sequences Status Flag
1225naFecal samples from individuals aged 59 (dominant feces, gut wall, the netherlands, amsterdam, human middle aged stage, 59-year-old human stage, homo sapiens)2025-10-15v41 / 19pendingNo
1225naFecal samples from individuals aged 67 (dominant 67-year-old human stage, feces, gut wall, the netherlands, amsterdam, homo sapiens, human aged stage)2025-10-15v41 / 19pendingNo
1225naFecal samples from individuals aged 58 (dominant feces, gut wall, the netherlands, amsterdam, human middle aged stage, 58-year-old human stage, homo sapiens)2025-10-15v41 / 20pendingNo
1225naFecal samples from individuals with BMI 21 (dominant feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 20pendingNo
1225naFecal samples from individuals with BMI 27 (dominant feces, gut wall, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 21pendingNo
1225naHIV-positive individuals (dominant feces, human immunodeficiency virus infectious disease, antiretroviral therapy, gut wall, blood serum, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1225naHIV-negative individuals (dominant control, feces, gut wall, blood serum, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1225naFecal samples from individuals aged 51 (dominant feces, gut wall, 51-year-old human stage, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 22pendingNo
1225naFecal samples from individuals aged 52 (dominant feces, 52-year-old human stage, gut wall, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 22pendingNo
1225naFecal samples from individuals aged 61 (dominant 61-year-old human stage, feces, gut wall, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 22pendingNo
1225naFecal samples from individuals aged 62 (dominant feces, gut wall, the netherlands, amsterdam, human middle aged stage, homo sapiens, 62-year-old human stage)2025-10-15v41 / 22pendingNo
1225naFecal samples from individuals aged 63 (dominant 63-year-old human stage, feces, gut wall, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 22pendingNo
1225naFecal samples from individuals aged 66 (dominant feces, gut wall, the netherlands, homo sapiens, amsterdam, 66-year-old human stage, human aged stage)2025-10-15v41 / 22pendingNo
1225naFecal samples from individuals with BMI 24 (dominant feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1225naFecal samples from individuals with BMI 28 (dominant feces, gut wall, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 22pendingNo
1225naFecal samples from individuals with BMI 19 (dominant feces, gut wall, human adult stage, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 22pendingNo
1225naFecal samples from males (dominant feces, gut wall, human adult stage, the netherlands, amsterdam, male, homo sapiens)2025-10-15v41 / 23pendingNo
1225naFecal samples from individuals aged 70 (dominant feces, gut wall, 70-year-old human stage, the netherlands, amsterdam, homo sapiens, human aged stage)2025-10-15v41 / 23pendingNo
1225naFecal samples from individuals with BMI 19 (dominant feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 23pendingNo
1225naFecal samples from individuals aged 68 (dominant feces, gut wall, the netherlands, amsterdam, 68-year-old human stage, homo sapiens, human aged stage)2025-10-15v41 / 24pendingNo
1225naFecal samples from individuals with BMI 20 (dominant feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 24pendingNo
1225naFecal samples from individuals with BMI 22 (dominant feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 24pendingNo
1225naFecal samples from individuals with BMI 23 (dominant feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 24pendingNo
1225naFecal samples from individuals aged 55 (dominant feces, gut wall, 55-year-old human stage, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 25pendingNo
1225naFecal samples from individuals with BMI 26 (dominant feces, gut wall, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 25pendingNo
1225naFecal samples from individuals aged 50 (dominant 50-year-old human stage, feces, gut wall, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 26pendingNo
1225naFecal samples from individuals with BMI 25 (dominant feces, gut wall, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 26pendingNo
1225naFecal samples from individuals with BMI 29 (dominant feces, gut wall, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 26pendingNo
1225naFecal samples from individuals aged 62 (common feces, gut wall, the netherlands, amsterdam, human middle aged stage, homo sapiens, 62-year-old human stage)2025-10-15v41 / 73pendingNo
1225naFecal samples from individuals with BMI 22 (common feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 83pendingNo
1225naHIV-positive individuals (common feces, human immunodeficiency virus infectious disease, antiretroviral therapy, gut wall, blood serum, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 95pendingNo
1225naFecal samples from individuals aged 61 (common 61-year-old human stage, feces, gut wall, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 102pendingNo
1225naFecal samples from individuals with BMI 19 (common feces, gut wall, human adult stage, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 102pendingNo
1225naFecal samples from individuals aged 55 (common feces, gut wall, 55-year-old human stage, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 105pendingNo
1225naFecal samples from males (common feces, gut wall, human adult stage, the netherlands, amsterdam, male, homo sapiens)2025-10-15v41 / 106pendingNo
1225naFecal samples from individuals with BMI 23 (common feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 116pendingNo
1225naFecal samples from individuals with BMI 25 (common feces, gut wall, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 117pendingNo
1225naFecal samples from individuals with BMI 26 (common feces, gut wall, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 118pendingNo
1225naFecal samples from individuals with BMI 19 (common feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 122pendingNo
1225naFecal samples from individuals aged 58 (common feces, gut wall, the netherlands, amsterdam, human middle aged stage, 58-year-old human stage, homo sapiens)2025-10-15v41 / 123pendingNo
1225naFecal samples from individuals with BMI 28 (common feces, gut wall, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 127pendingNo
1225naFecal samples from individuals aged 66 (common feces, gut wall, the netherlands, homo sapiens, amsterdam, 66-year-old human stage, human aged stage)2025-10-15v41 / 129pendingNo
1225naFecal samples from individuals with BMI 20 (common feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 129pendingNo
1225naFecal samples from individuals with BMI 27 (common feces, gut wall, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 133pendingNo
1225naFecal samples from individuals with BMI 29 (common feces, gut wall, the netherlands, amsterdam, 25-44 year-old human stage, homo sapiens)2025-10-15v41 / 138pendingNo
1225naFecal samples from individuals aged 52 (common feces, 52-year-old human stage, gut wall, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 139pendingNo
1225naFecal samples from individuals aged 63 (common 63-year-old human stage, feces, gut wall, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 143pendingNo
1225naFecal samples from individuals aged 50 (common 50-year-old human stage, feces, gut wall, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 145pendingNo
1225naFecal samples from individuals aged 59 (common feces, gut wall, the netherlands, amsterdam, human middle aged stage, 59-year-old human stage, homo sapiens)2025-10-15v41 / 145pendingNo
1225naHIV-negative individuals (common control, feces, gut wall, blood serum, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 149pendingNo
1225naFecal samples from individuals aged 70 (common feces, gut wall, 70-year-old human stage, the netherlands, amsterdam, homo sapiens, human aged stage)2025-10-15v41 / 156pendingNo
1225naFecal samples from individuals with BMI 21 (common feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 160pendingNo
1225naFecal samples from individuals aged 68 (common feces, gut wall, the netherlands, amsterdam, 68-year-old human stage, homo sapiens, human aged stage)2025-10-15v41 / 165pendingNo
1225naFecal samples from individuals aged 51 (common feces, gut wall, 51-year-old human stage, the netherlands, amsterdam, human middle aged stage, homo sapiens)2025-10-15v41 / 166pendingNo
1225naFecal samples from individuals with BMI 24 (common feces, gut wall, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 182pendingNo
1225naFecal samples from individuals aged 67 (common 67-year-old human stage, feces, gut wall, the netherlands, amsterdam, homo sapiens, human aged stage)2025-10-15v41 / 191pendingNo
1225naHIV-positive vs HIV-negative individuals ( high in human immunodeficiency virus infectious disease antiretroviral therapy compared to control in feces gut wall blood serum human adult stage the netherlands amsterdam homo sapiens )2025-10-15v41 / 217pendingNo
1225naHIV-positive vs HIV-negative individuals ( high in control compared to human immunodeficiency virus infectious disease antiretroviral therapy in feces gut wall blood serum human adult stage the netherlands amsterdam homo sapiens )2025-10-15v41 / 228pendingNo

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