Experiment ID: 1218

Field Description
namegut-microbiota-based ensemble model predicts prognosis of pediatric inflammatory bowel disease (11650326) - gemini-2.0-flash
proj_id11650326
sraprjna917086
date_of_upload15/10/2025 20:12
doi10.1016/j.isci.2024.111442
modelgemini-2.0-flash

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
seoul0.250000
LOWER IN irritable bowel syndrome0.166667
irritable bowel syndrome0.166667
inflammatory bowel disease0.111111
LOWER IN inflammatory bowel disease0.111111
adolescent stage0.076923
LOWER IN ileum0.066667
LOWER IN colon0.055556
south korea0.052632
ileum0.052632
LOWER IN crohn's disease0.050000
LOWER IN ulcerative colitis0.047619
ulcerative colitis0.045455
colon0.043478
crohn's disease0.043478
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
seoul1.000000
feces1.000000
south korea1.000000
adolescent stage1.000000
homo sapiens1.000000
colon0.461538
crohn's disease0.269231
ileum0.269231
ulcerative colitis0.269231
control0.230769
inflammatory bowel disease0.192308
LOWER IN colon0.153846
LOWER IN control0.153846
LOWER IN crohn's disease0.115385
LOWER IN ileum0.115385
LOWER IN ulcerative colitis0.115385
irritable bowel syndrome0.115385
tumor necrosis factor-alpha0.115385
LOWER IN irritable bowel syndrome0.038462
LOWER IN tumor necrosis factor-alpha0.038462
LOWER IN inflammatory bowel disease0.038462
Number of experiments associating the term to the sequence
TermScore
control1.000000
LOWER IN colon1.000000
LOWER IN crohn's disease1.000000
LOWER IN ileum1.000000
LOWER IN ulcerative colitis1.000000
seoul1.000000
feces1.000000
south korea1.000000
adolescent stage1.000000
homo sapiens1.000000
colon1.000000
crohn's disease1.000000
ileum1.000000
ulcerative colitis1.000000
LOWER IN control1.000000
LOWER IN irritable bowel syndrome1.000000
irritable bowel syndrome1.000000
inflammatory bowel disease1.000000
tumor necrosis factor-alpha1.000000
LOWER IN tumor necrosis factor-alpha1.000000
LOWER IN inflammatory bowel disease1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1218naUC Active (dominant colon, feces, seoul, adolescent stage, south korea, ulcerative colitis, homo sapiens)2025-10-15v31 / 16pendingNo
1218naUC (all disease states) vs Healthy Controls ( high in control compared to colon ulcerative colitis in seoul feces south korea adolescent stage homo sapiens )2025-10-15v31 / 16pendingNo
1218naFunctional Gastrointestinal Disorders (FGID) (dominant irritable bowel syndrome, seoul, feces, south korea, adolescent stage, homo sapiens)2025-10-15v31 / 18pendingNo
1218naUC (all disease states) vs Healthy Controls ( high in colon ulcerative colitis compared to control in seoul feces south korea adolescent stage homo sapiens )2025-10-15v31 / 18pendingNo
1218naPatients on Anti-TNF alpha therapy (dominant tumor necrosis factor-alpha, seoul, inflammatory bowel disease, feces, south korea, adolescent stage, homo sapiens)2025-10-15v31 / 19pendingNo
1218naHealthy Controls (dominant seoul, feces, south korea, adolescent stage, control, homo sapiens)2025-10-15v31 / 20pendingNo
1218naUC Remission (dominant colon, feces, seoul, adolescent stage, south korea, ulcerative colitis, homo sapiens)2025-10-15v31 / 21pendingNo
1218naCD Remission (dominant colon, crohn's disease, feces, seoul, ileum, adolescent stage, south korea, homo sapiens)2025-10-15v31 / 24pendingNo
1218naCalprotectin > 2000 (dominant seoul, inflammatory bowel disease, feces, south korea, adolescent stage, homo sapiens)2025-10-15v31 / 26pendingNo
1218naCD Active (common colon, crohn's disease, feces, seoul, ileum, adolescent stage, south korea, homo sapiens)2025-10-15v31 / 28pendingNo
1218naCD Active (dominant colon, crohn's disease, feces, seoul, ileum, adolescent stage, south korea, homo sapiens)2025-10-15v31 / 28pendingNo
1218naCD Remission (common colon, crohn's disease, feces, seoul, ileum, adolescent stage, south korea, homo sapiens)2025-10-15v31 / 32pendingNo
1218naUC Active (common colon, feces, seoul, adolescent stage, south korea, ulcerative colitis, homo sapiens)2025-10-15v31 / 33pendingNo
1218naPatients on Anti-TNF alpha therapy vs Healthy Controls ( high in control compared to tumor necrosis factor-alpha inflammatory bowel disease in seoul feces south korea adolescent stage homo sapiens )2025-10-15v31 / 35pendingNo
1218naPatients on Anti-TNF alpha therapy (common tumor necrosis factor-alpha, seoul, inflammatory bowel disease, feces, south korea, adolescent stage, homo sapiens)2025-10-15v31 / 36pendingNo
1218naPatients on Anti-TNF alpha therapy vs Healthy Controls ( high in tumor necrosis factor-alpha inflammatory bowel disease compared to control in seoul feces south korea adolescent stage homo sapiens )2025-10-15v31 / 36pendingNo
1218naCalprotectin > 2000 (common seoul, inflammatory bowel disease, feces, south korea, adolescent stage, homo sapiens)2025-10-15v31 / 43pendingNo
1218naUC Remission (common colon, feces, seoul, adolescent stage, south korea, ulcerative colitis, homo sapiens)2025-10-15v31 / 47pendingNo
1218naFunctional Gastrointestinal Disorders (FGID) (common irritable bowel syndrome, seoul, feces, south korea, adolescent stage, homo sapiens)2025-10-15v31 / 51pendingNo
1218naIBD (CD & UC, all disease states) vs FGID ( high in irritable bowel syndrome compared to colon crohn's disease ileum ulcerative colitis in seoul feces south korea adolescent stage homo sapiens )2025-10-15v31 / 56pendingNo
1218naIBD (CD & UC, all disease states) vs FGID ( high in colon crohn's disease ileum ulcerative colitis compared to irritable bowel syndrome in seoul feces south korea adolescent stage homo sapiens )2025-10-15v31 / 58pendingNo
1218naHealthy Controls (common seoul, feces, south korea, adolescent stage, control, homo sapiens)2025-10-15v31 / 61pendingNo
1218naCD (all disease states) vs Healthy Controls ( high in colon crohn's disease ileum compared to control in seoul feces south korea adolescent stage homo sapiens )2025-10-15v31 / 108pendingNo
1218naIBD (CD & UC, all disease states) vs Healthy Controls ( high in colon crohn's disease ileum ulcerative colitis compared to control in seoul feces south korea adolescent stage homo sapiens )2025-10-15v31 / 111pendingNo
1218naCD (all disease states) vs Healthy Controls ( high in control compared to colon crohn's disease ileum in seoul feces south korea adolescent stage homo sapiens )2025-10-15v31 / 112pendingNo
1218naIBD (CD & UC, all disease states) vs Healthy Controls ( high in control compared to colon crohn's disease ileum ulcerative colitis in seoul feces south korea adolescent stage homo sapiens )2025-10-15v31 / 113pendingNo

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