Experiment ID: 1213

Field Description
nameimpaired gut microbiota-mediated short-chain fatty acid production precedes morbidity and mortality in people with hiv (nihms-1948184) - gpt-4o-mini-2024-07-18
proj_idnihms-1948184
sraprjna994573
date_of_upload15/10/2025 20:10
doi10.1016/j.celrep.2023.113336
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN human immunodeficiency virus infectious disease0.500000
human immunodeficiency virus infectious disease0.333333
amsterdam0.200000
kingdom of the netherlands0.100000
human adult stage0.023256
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
no antibiotic use1.000000
the netherlands1.000000
amsterdam1.000000
kingdom of the netherlands1.000000
feces1.000000
homo sapiens1.000000
human adult stage1.000000
hiv-negative0.500000
hiv-positive0.500000
human immunodeficiency virus infectious disease0.500000
LOWER IN hiv-positive0.166667
LOWER IN human immunodeficiency virus infectious disease0.166667
LOWER IN hiv-negative0.166667
Number of experiments associating the term to the sequence
TermScore
hiv-negative1.000000
LOWER IN hiv-positive1.000000
LOWER IN human immunodeficiency virus infectious disease1.000000
no antibiotic use1.000000
the netherlands1.000000
amsterdam1.000000
kingdom of the netherlands1.000000
feces1.000000
homo sapiens1.000000
human adult stage1.000000
hiv-positive1.000000
human immunodeficiency virus infectious disease1.000000
LOWER IN hiv-negative1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1213naHIV-positive Samples (dominant no antibiotic use, the netherlands, amsterdam, human immunodeficiency virus infectious disease, kingdom of the netherlands, feces, homo sapiens, human adult stage, hiv-positive)2025-10-15v41 / 22pendingNo
1213naHIV-negative Samples (dominant no antibiotic use, the netherlands, hiv-negative, amsterdam, kingdom of the netherlands, feces, homo sapiens, human adult stage)2025-10-15v41 / 22pendingNo
1213naHIV-positive Samples (common no antibiotic use, the netherlands, amsterdam, human immunodeficiency virus infectious disease, kingdom of the netherlands, feces, homo sapiens, human adult stage, hiv-positive)2025-10-15v41 / 95pendingNo
1213naHIV-negative Samples (common no antibiotic use, the netherlands, hiv-negative, amsterdam, kingdom of the netherlands, feces, homo sapiens, human adult stage)2025-10-15v41 / 149pendingNo
1213naHIV-positive vs HIV-negative fecal microbiota ( high in hiv-positive human immunodeficiency virus infectious disease compared to hiv-negative in no antibiotic use the netherlands amsterdam kingdom of the netherlands feces homo sapiens human adult stage )2025-10-15v41 / 214pendingNo
1213naHIV-positive vs HIV-negative fecal microbiota ( high in hiv-negative compared to hiv-positive human immunodeficiency virus infectious disease in no antibiotic use the netherlands amsterdam kingdom of the netherlands feces homo sapiens human adult stage )2025-10-15v41 / 217pendingNo

Problems / suggestions? Please visit the dbBact forum