Experiment ID: 1213

Field Description
nameimpaired gut microbiota-mediated short-chain fatty acid production precedes morbidity and mortality in people with hiv (nihms-1948184) - gpt-4o-mini-2024-07-18
proj_idnihms-1948184
sraprjna994573
date_of_upload15/10/2025 20:10
doi10.1016/j.celrep.2023.113336
modelgpt-4o-mini-2024-07-18

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN human immunodeficiency virus infectious disease0.500000
human immunodeficiency virus infectious disease0.333333
amsterdam0.200000
kingdom of the netherlands0.100000
human adult stage0.023256
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
homo sapiens1.000000
kingdom of the netherlands1.000000
amsterdam1.000000
the netherlands1.000000
human adult stage1.000000
no antibiotic use1.000000
hiv-negative0.500000
human immunodeficiency virus infectious disease0.500000
hiv-positive0.500000
LOWER IN human immunodeficiency virus infectious disease0.166667
LOWER IN hiv-positive0.166667
LOWER IN hiv-negative0.166667
Number of experiments associating the term to the sequence
TermScore
hiv-negative1.000000
LOWER IN human immunodeficiency virus infectious disease1.000000
LOWER IN hiv-positive1.000000
feces1.000000
homo sapiens1.000000
kingdom of the netherlands1.000000
amsterdam1.000000
the netherlands1.000000
human adult stage1.000000
no antibiotic use1.000000
human immunodeficiency virus infectious disease1.000000
hiv-positive1.000000
LOWER IN hiv-negative1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1213naHIV-positive Samples (dominant feces, homo sapiens, kingdom of the netherlands, amsterdam, human immunodeficiency virus infectious disease, the netherlands, human adult stage, no antibiotic use, hiv-positive)2025-10-15v41 / 22pendingNo
1213naHIV-negative Samples (dominant feces, homo sapiens, kingdom of the netherlands, amsterdam, the netherlands, human adult stage, no antibiotic use, hiv-negative)2025-10-15v41 / 22pendingNo
1213naHIV-positive Samples (common feces, homo sapiens, kingdom of the netherlands, amsterdam, human immunodeficiency virus infectious disease, the netherlands, human adult stage, no antibiotic use, hiv-positive)2025-10-15v41 / 95pendingNo
1213naHIV-negative Samples (common feces, homo sapiens, kingdom of the netherlands, amsterdam, the netherlands, human adult stage, no antibiotic use, hiv-negative)2025-10-15v41 / 149pendingNo
1213naHIV-positive vs HIV-negative fecal microbiota ( high in human immunodeficiency virus infectious disease hiv-positive compared to hiv-negative in feces homo sapiens kingdom of the netherlands amsterdam the netherlands human adult stage no antibiotic use )2025-10-15v41 / 214pendingNo
1213naHIV-positive vs HIV-negative fecal microbiota ( high in hiv-negative compared to human immunodeficiency virus infectious disease hiv-positive in feces homo sapiens kingdom of the netherlands amsterdam the netherlands human adult stage no antibiotic use )2025-10-15v41 / 217pendingNo

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