Experiment ID: 1179

Field Description
nameimpaired gut microbiota-mediated short-chain fatty acid production precedes morbidity and mortality in people with hiv (nihms-1948184)
proj_idnihms-1948184
sraprjna994573
doi10.1016/j.celrep.2023.113336

Annotations for experiment:

term enrichment score
TermScore
amsterdam0.333333
human middle aged stage0.279070
25-44 year-old human stage0.205128
human aged stage0.179775
antiretroviral therapy0.095238
human immunodeficiency virus infectious disease0.090909
human adult stage0.043750
male0.025478
control0.007890
LOWER IN control0.007220
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
antiretroviral therapy0.500000
human immunodeficiency virus infectious disease0.333333
human aged stage0.250000
human middle aged stage0.250000
amsterdam0.200000
25-44 year-old human stage0.200000
human adult stage0.023256
male0.020000
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
feces0.002294
Exp. ID User ID Description Date Region Sequences Status Flag
1179naFecal samples from individuals aged 67 (dominant human aged stage, amsterdam, 67-year-old human stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 19pendingNo
1179naFecal samples from individuals aged 59 (dominant amsterdam, 59-year-old human stage, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 19pendingNo
1179naFecal samples from individuals with BMI 21 (dominant amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 20pendingNo
1179naFecal samples from individuals aged 58 (dominant amsterdam, 58-year-old human stage, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 20pendingNo
1179naFecal samples from individuals with BMI 27 (dominant 25-44 year-old human stage, amsterdam, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 21pendingNo
1179naFecal samples from individuals aged 61 (dominant 61-year-old human stage, amsterdam, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 22pendingNo
1179naFecal samples from individuals aged 62 (dominant amsterdam, 62-year-old human stage, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 22pendingNo
1179naFecal samples from individuals aged 63 (dominant amsterdam, gut wall, 63-year-old human stage, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 22pendingNo
1179naFecal samples from individuals aged 66 (dominant human aged stage, amsterdam, 66-year-old human stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 22pendingNo
1179naFecal samples from individuals with BMI 24 (dominant amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 22pendingNo
1179naFecal samples from individuals with BMI 28 (dominant 25-44 year-old human stage, amsterdam, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 22pendingNo
1179naFecal samples from individuals with BMI 19 (dominant 25-44 year-old human stage, amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 22pendingNo
1179naHIV-positive individuals (dominant amsterdam, human adult stage, gut wall, human immunodeficiency virus infectious disease, antiretroviral therapy, homo sapiens, feces, blood serum, the netherlands)2025-10-15v41 / 22pendingNo
1179naHIV-negative individuals (dominant control, amsterdam, human adult stage, gut wall, homo sapiens, feces, blood serum, the netherlands)2025-10-15v41 / 22pendingNo
1179naFecal samples from individuals aged 51 (dominant amsterdam, gut wall, homo sapiens, human middle aged stage, 51-year-old human stage, feces, the netherlands)2025-10-15v41 / 22pendingNo
1179naFecal samples from individuals aged 52 (dominant amsterdam, gut wall, 52-year-old human stage, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 22pendingNo
1179naFecal samples from individuals aged 70 (dominant human aged stage, amsterdam, gut wall, homo sapiens, feces, the netherlands, 70-year-old human stage)2025-10-15v41 / 23pendingNo
1179naFecal samples from individuals with BMI 19 (dominant amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 23pendingNo
1179naFecal samples from males (dominant male, amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 23pendingNo
1179naFecal samples from individuals aged 68 (dominant human aged stage, amsterdam, gut wall, 68-year-old human stage, homo sapiens, feces, the netherlands)2025-10-15v41 / 24pendingNo
1179naFecal samples from individuals with BMI 20 (dominant amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 24pendingNo
1179naFecal samples from individuals with BMI 22 (dominant amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 24pendingNo
1179naFecal samples from individuals with BMI 23 (dominant amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 24pendingNo
1179naFecal samples from individuals with BMI 26 (dominant 25-44 year-old human stage, amsterdam, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 25pendingNo
1179naFecal samples from individuals aged 55 (dominant amsterdam, 55-year-old human stage, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 25pendingNo
1179naFecal samples from individuals with BMI 25 (dominant 25-44 year-old human stage, amsterdam, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 26pendingNo
1179naFecal samples from individuals with BMI 29 (dominant 25-44 year-old human stage, amsterdam, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 26pendingNo
1179naFecal samples from individuals aged 50 (dominant amsterdam, 50-year-old human stage, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 26pendingNo
1179naFecal samples from individuals aged 62 (common amsterdam, 62-year-old human stage, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 73pendingNo
1179naFecal samples from individuals with BMI 22 (common amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 83pendingNo
1179naHIV-positive individuals (common amsterdam, human adult stage, gut wall, human immunodeficiency virus infectious disease, antiretroviral therapy, homo sapiens, feces, blood serum, the netherlands)2025-10-15v41 / 95pendingNo
1179naFecal samples from individuals with BMI 19 (common 25-44 year-old human stage, amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 102pendingNo
1179naFecal samples from individuals aged 61 (common 61-year-old human stage, amsterdam, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 102pendingNo
1179naFecal samples from individuals aged 55 (common amsterdam, 55-year-old human stage, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 105pendingNo
1179naFecal samples from males (common male, amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 106pendingNo
1179naFecal samples from individuals with BMI 23 (common amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 116pendingNo
1179naFecal samples from individuals with BMI 25 (common 25-44 year-old human stage, amsterdam, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 117pendingNo
1179naFecal samples from individuals with BMI 26 (common 25-44 year-old human stage, amsterdam, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 118pendingNo
1179naFecal samples from individuals with BMI 19 (common amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 122pendingNo
1179naFecal samples from individuals aged 58 (common amsterdam, 58-year-old human stage, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 123pendingNo
1179naFecal samples from individuals with BMI 28 (common 25-44 year-old human stage, amsterdam, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 127pendingNo
1179naFecal samples from individuals aged 66 (common human aged stage, amsterdam, 66-year-old human stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 129pendingNo
1179naFecal samples from individuals with BMI 20 (common amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 129pendingNo
1179naFecal samples from individuals with BMI 27 (common 25-44 year-old human stage, amsterdam, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 133pendingNo
1179naFecal samples from individuals with BMI 29 (common 25-44 year-old human stage, amsterdam, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 138pendingNo
1179naFecal samples from individuals aged 52 (common amsterdam, gut wall, 52-year-old human stage, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 139pendingNo
1179naFecal samples from individuals aged 63 (common amsterdam, gut wall, 63-year-old human stage, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 143pendingNo
1179naFecal samples from individuals aged 50 (common amsterdam, 50-year-old human stage, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 145pendingNo
1179naFecal samples from individuals aged 59 (common amsterdam, 59-year-old human stage, gut wall, homo sapiens, human middle aged stage, feces, the netherlands)2025-10-15v41 / 145pendingNo
1179naHIV-negative individuals (common control, amsterdam, human adult stage, gut wall, homo sapiens, feces, blood serum, the netherlands)2025-10-15v41 / 149pendingNo
1179naFecal samples from individuals aged 70 (common human aged stage, amsterdam, gut wall, homo sapiens, feces, the netherlands, 70-year-old human stage)2025-10-15v41 / 156pendingNo
1179naFecal samples from individuals with BMI 21 (common amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 160pendingNo
1179naFecal samples from individuals aged 68 (common human aged stage, amsterdam, gut wall, 68-year-old human stage, homo sapiens, feces, the netherlands)2025-10-15v41 / 165pendingNo
1179naFecal samples from individuals aged 51 (common amsterdam, gut wall, homo sapiens, human middle aged stage, 51-year-old human stage, feces, the netherlands)2025-10-15v41 / 166pendingNo
1179naFecal samples from individuals with BMI 24 (common amsterdam, human adult stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 182pendingNo
1179naFecal samples from individuals aged 67 (common human aged stage, amsterdam, 67-year-old human stage, gut wall, homo sapiens, feces, the netherlands)2025-10-15v41 / 191pendingNo
1179naHIV-positive vs HIV-negative individuals ( high in antiretroviral therapy human immunodeficiency virus infectious disease compared to control in amsterdam human adult stage gut wall homo sapiens feces blood serum the netherlands )2025-10-15v41 / 214pendingNo

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