Experiment ID: 1174

Field Description
nameimpaired gut microbiota-mediated short-chain fatty acid production precedes morbidity and mortality in people with hiv (nihms-1948184)
proj_idnihms-1948184
sraprjna994573
doi10.1016/j.celrep.2023.113336

Annotations for experiment:

term enrichment score
TermScore
amsterdam0.333333
human middle aged stage0.276923
25-44 year-old human stage0.203390
human aged stage0.177778
human adult stage0.043825
male0.031008
control0.008351
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
human aged stage0.250000
human middle aged stage0.250000
amsterdam0.200000
25-44 year-old human stage0.200000
human adult stage0.023256
male0.020000
control0.004444
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
gut wall1.000000
feces1.000000
the netherlands1.000000
amsterdam1.000000
homo sapiens1.000000
human adult stage0.379310
human middle aged stage0.310345
25-44 year-old human stage0.206897
human aged stage0.137931
blood serum0.068966
control0.068966
male0.068966
67-year-old human stage0.034483
51-year-old human stage0.034483
68-year-old human stage0.034483
70-year-old human stage0.034483
50-year-old human stage0.034483
59-year-old human stage0.034483
63-year-old human stage0.034483
52-year-old human stage0.034483
66-year-old human stage0.034483
58-year-old human stage0.034483
55-year-old human stage0.034483
61-year-old human stage0.034483
62-year-old human stage0.034483
Exp. ID User ID Description Date Region Sequences Status Flag
1174naFecal samples from individuals aged 59 (dominant gut wall, feces, human middle aged stage, 59-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 19pendingNo
1174naFecal samples from individuals aged 67 (dominant gut wall, feces, human aged stage, 67-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 19pendingNo
1174naFecal samples from individuals aged 58 (dominant gut wall, feces, human middle aged stage, 58-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 20pendingNo
1174naFecal samples from individuals with BMI 21 (dominant gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 20pendingNo
1174naFecal samples from individuals with BMI 27 (dominant gut wall, feces, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 21pendingNo
1174naHIV-negative individuals (dominant gut wall, feces, blood serum, human adult stage, the netherlands, amsterdam, homo sapiens, control)2025-10-15v41 / 22pendingNo
1174naFecal samples from individuals aged 51 (dominant gut wall, feces, human middle aged stage, 51-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1174naFecal samples from individuals aged 52 (dominant gut wall, feces, human middle aged stage, 52-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1174naFecal samples from individuals aged 61 (dominant gut wall, feces, human middle aged stage, 61-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1174naFecal samples from individuals aged 62 (dominant gut wall, feces, human middle aged stage, 62-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1174naFecal samples from individuals aged 63 (dominant gut wall, feces, human middle aged stage, 63-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1174naFecal samples from individuals aged 66 (dominant gut wall, feces, human aged stage, 66-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1174naFecal samples from individuals with BMI 24 (dominant gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1174naFecal samples from individuals with BMI 28 (dominant gut wall, feces, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1174naHIV-negative individuals (dominant gut wall, blood serum, feces, human adult stage, the netherlands, amsterdam, homo sapiens, control)2025-10-15v41 / 22pendingNo
1174naFecal samples from individuals with BMI 19 (dominant gut wall, feces, human adult stage, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 22pendingNo
1174naFecal samples from males (dominant gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens, male)2025-10-15v41 / 23pendingNo
1174naFecal samples from individuals aged 70 (dominant gut wall, feces, human aged stage, 70-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 23pendingNo
1174naFecal samples from individuals with BMI 19 (dominant gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 23pendingNo
1174naFecal samples from males (dominant gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens, male)2025-10-15v41 / 23pendingNo
1174naFecal samples from individuals aged 68 (dominant gut wall, feces, human aged stage, 68-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 24pendingNo
1174naFecal samples from individuals with BMI 20 (dominant gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 24pendingNo
1174naFecal samples from individuals with BMI 22 (dominant gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 24pendingNo
1174naFecal samples from individuals with BMI 23 (dominant gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 24pendingNo
1174naFecal samples from individuals aged 55 (dominant gut wall, feces, human middle aged stage, 55-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 25pendingNo
1174naFecal samples from individuals with BMI 26 (dominant gut wall, feces, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 25pendingNo
1174naFecal samples from individuals aged 50 (dominant gut wall, feces, human middle aged stage, 50-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 26pendingNo
1174naFecal samples from individuals with BMI 25 (dominant gut wall, feces, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 26pendingNo
1174naFecal samples from individuals with BMI 29 (dominant gut wall, feces, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 26pendingNo
1174naFecal samples from individuals aged 62 (common gut wall, feces, human middle aged stage, 62-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 73pendingNo
1174naFecal samples from individuals with BMI 22 (common gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 83pendingNo
1174naFecal samples from individuals aged 61 (common gut wall, feces, human middle aged stage, 61-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 102pendingNo
1174naFecal samples from individuals with BMI 19 (common gut wall, feces, human adult stage, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 102pendingNo
1174naFecal samples from individuals aged 55 (common gut wall, feces, human middle aged stage, 55-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 105pendingNo
1174naFecal samples from males (common gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens, male)2025-10-15v41 / 106pendingNo
1174naFecal samples from males (common gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens, male)2025-10-15v41 / 106pendingNo
1174naFecal samples from individuals with BMI 23 (common gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 116pendingNo
1174naFecal samples from individuals with BMI 25 (common gut wall, feces, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 117pendingNo
1174naFecal samples from individuals with BMI 26 (common gut wall, feces, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 118pendingNo
1174naFecal samples from individuals with BMI 19 (common gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 122pendingNo
1174naFecal samples from individuals aged 58 (common gut wall, feces, human middle aged stage, 58-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 123pendingNo
1174naFecal samples from individuals with BMI 28 (common gut wall, feces, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 127pendingNo
1174naFecal samples from individuals aged 66 (common gut wall, feces, human aged stage, 66-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 129pendingNo
1174naFecal samples from individuals with BMI 20 (common gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 129pendingNo
1174naFecal samples from individuals with BMI 27 (common gut wall, feces, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 133pendingNo
1174naFecal samples from individuals with BMI 29 (common gut wall, feces, 25-44 year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 138pendingNo
1174naFecal samples from individuals aged 52 (common gut wall, feces, human middle aged stage, 52-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 139pendingNo
1174naFecal samples from individuals aged 63 (common gut wall, feces, human middle aged stage, 63-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 143pendingNo
1174naFecal samples from individuals aged 50 (common gut wall, feces, human middle aged stage, 50-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 145pendingNo
1174naFecal samples from individuals aged 59 (common gut wall, feces, human middle aged stage, 59-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 145pendingNo
1174naHIV-negative individuals (common gut wall, feces, blood serum, human adult stage, the netherlands, amsterdam, homo sapiens, control)2025-10-15v41 / 149pendingNo
1174naHIV-negative individuals (common gut wall, blood serum, feces, human adult stage, the netherlands, amsterdam, homo sapiens, control)2025-10-15v41 / 149pendingNo
1174naFecal samples from individuals aged 70 (common gut wall, feces, human aged stage, 70-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 156pendingNo
1174naFecal samples from individuals with BMI 21 (common gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 160pendingNo
1174naFecal samples from individuals aged 68 (common gut wall, feces, human aged stage, 68-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 165pendingNo
1174naFecal samples from individuals aged 51 (common gut wall, feces, human middle aged stage, 51-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 166pendingNo
1174naFecal samples from individuals with BMI 24 (common gut wall, feces, human adult stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 182pendingNo
1174naFecal samples from individuals aged 67 (common gut wall, feces, human aged stage, 67-year-old human stage, the netherlands, amsterdam, homo sapiens)2025-10-15v41 / 191pendingNo

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