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Experiment ID: 1069

Field	Description
name	microbial community function and bacterial pathogen composition in pit latrines in peri-urban malawi
sra	prjna913150
doi	https://doi.org/10.1371/journal.pwat.0000171
datamd5	971435adf1d518885e06bba5b1440b5f
mapmd5	ced20d69b1ab89656af2ec6714f73ce2

Annotations for experiment:

term enrichment score

Term	Score
pit latrine	0.500000
top layer	0.434783
bottom layer	0.352941
malawi	0.333333
bottom	0.260870
LOWER IN top layer	0.181818
LOWER IN bottom layer	0.181818
mzuzu city	0.181818
LOWER IN blantyre	0.181818
blantyre	0.181818
LOWER IN mzuzu city	0.181818
surface	0.158730
LOWER IN bottom	0.153846
peri-urban community	0.153846
LOWER IN peri-urban community	0.153846
LOWER IN surface	0.133333
LOWER IN urban community	0.133333
urban community	0.133333

Fraction of dbbact annotations with this term covered by the query

Term	Score
pit latrine	0.333333
bottom layer	0.333333
top layer	0.333333
LOWER IN top layer	0.333333
LOWER IN bottom layer	0.333333
mzuzu city	0.333333
LOWER IN blantyre	0.333333
blantyre	0.333333
LOWER IN mzuzu city	0.333333
malawi	0.200000
bottom	0.200000
LOWER IN bottom	0.200000
peri-urban community	0.200000
LOWER IN peri-urban community	0.200000
LOWER IN surface	0.142857
LOWER IN urban community	0.142857
urban community	0.142857
surface	0.090909

Fraction of annotations for the query sequences containing the term

Term	Score
pit latrine	1.000000
malawi	1.000000
surface	0.625000
top layer	0.625000
bottom layer	0.375000
bottom	0.375000
LOWER IN top layer	0.125000
LOWER IN surface	0.125000
LOWER IN bottom layer	0.125000
LOWER IN bottom	0.125000
mzuzu city	0.125000
peri-urban community	0.125000
LOWER IN blantyre	0.125000
LOWER IN urban community	0.125000
blantyre	0.125000
urban community	0.125000
LOWER IN mzuzu city	0.125000
LOWER IN peri-urban community	0.125000

Number of experiments associating the term to the sequence

Term	Score
pit latrine	1.000000
malawi	1.000000
bottom layer	1.000000
bottom	1.000000
surface	1.000000
top layer	1.000000
LOWER IN top layer	1.000000
LOWER IN surface	1.000000
LOWER IN bottom layer	1.000000
LOWER IN bottom	1.000000
mzuzu city	1.000000
peri-urban community	1.000000
LOWER IN blantyre	1.000000
LOWER IN urban community	1.000000
blantyre	1.000000
urban community	1.000000
LOWER IN mzuzu city	1.000000
LOWER IN peri-urban community	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
1069	amnon	high in blantyre urban community compared to mzuzu city peri-urban community in pit latrine malawi top layer surface	2023-12-10	v3	1 / 5	pending	No
1069	amnon	dominant bottom, pit latrine, malawi, bottom layer	2023-12-10	v3	1 / 10	pending	No
1069	amnon	dominant surface, pit latrine, malawi, top layer	2023-12-10	v3	1 / 13	pending	No
1069	amnon	high in mzuzu city peri-urban community compared to blantyre urban community in surface pit latrine malawi top layer	2023-12-10	v3	1 / 32	pending	No
1069	amnon	high in top layer surface compared to bottom layer bottom in malawi pit latrine	2023-12-10	v3	1 / 56	pending	No
1069	amnon	high in bottom layer bottom compared to top layer surface in pit latrine malawi	2023-12-10	v3	1 / 74	pending	No
1069	amnon	common pit latrine, malawi, surface, top layer	2023-12-10	v3	1 / 126	pending	No
1069	amnon	common pit latrine, malawi, bottom layer, bottom	2023-12-10	v3	1 / 142	pending	No

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