dbBact

This is the development server

Experiment ID: 1069

Field	Description
name	microbial community function and bacterial pathogen composition in pit latrines in peri-urban malawi
sra	prjna913150
doi	https://doi.org/10.1371/journal.pwat.0000171
datamd5	971435adf1d518885e06bba5b1440b5f
mapmd5	ced20d69b1ab89656af2ec6714f73ce2

Annotations for experiment:

term enrichment score

Term	Score
pit latrine	0.666667
top layer	0.555556
malawi	0.500000
bottom layer	0.428571
bottom	0.352941
surface	0.263158
LOWER IN top layer	0.200000
LOWER IN bottom layer	0.200000
mzuzu city	0.200000
LOWER IN blantyre	0.200000
blantyre	0.200000
LOWER IN mzuzu city	0.200000
LOWER IN bottom	0.181818
peri-urban community	0.181818
LOWER IN peri-urban community	0.181818
LOWER IN surface	0.166667
LOWER IN urban community	0.166667
urban community	0.166667

Fraction of dbbact annotations with this term covered by the query

Term	Score
pit latrine	0.500000
bottom layer	0.500000
top layer	0.500000
LOWER IN top layer	0.500000
LOWER IN bottom layer	0.500000
mzuzu city	0.500000
LOWER IN blantyre	0.500000
blantyre	0.500000
LOWER IN mzuzu city	0.500000
bottom	0.333333
malawi	0.333333
LOWER IN bottom	0.333333
peri-urban community	0.333333
LOWER IN peri-urban community	0.333333
LOWER IN surface	0.250000
LOWER IN urban community	0.250000
urban community	0.250000
surface	0.166667

Fraction of annotations for the query sequences containing the term

Term	Score
pit latrine	1.000000
malawi	1.000000
surface	0.625000
top layer	0.625000
bottom	0.375000
bottom layer	0.375000
LOWER IN surface	0.125000
LOWER IN top layer	0.125000
LOWER IN bottom	0.125000
LOWER IN bottom layer	0.125000
mzuzu city	0.125000
peri-urban community	0.125000
LOWER IN blantyre	0.125000
LOWER IN urban community	0.125000
blantyre	0.125000
urban community	0.125000
LOWER IN mzuzu city	0.125000
LOWER IN peri-urban community	0.125000

Number of experiments associating the term to the sequence

Term	Score
bottom	1.000000
pit latrine	1.000000
malawi	1.000000
bottom layer	1.000000
surface	1.000000
top layer	1.000000
LOWER IN surface	1.000000
LOWER IN top layer	1.000000
LOWER IN bottom	1.000000
LOWER IN bottom layer	1.000000
mzuzu city	1.000000
peri-urban community	1.000000
LOWER IN blantyre	1.000000
LOWER IN urban community	1.000000
blantyre	1.000000
urban community	1.000000
LOWER IN mzuzu city	1.000000
LOWER IN peri-urban community	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
1069	amnon	high in blantyre urban community compared to mzuzu city peri-urban community in surface pit latrine malawi top layer	2023-12-10	v3	1 / 5	pending	No
1069	amnon	dominant bottom, pit latrine, malawi, bottom layer	2023-12-10	v3	1 / 10	pending	No
1069	amnon	dominant surface, pit latrine, malawi, top layer	2023-12-10	v3	1 / 13	pending	No
1069	amnon	high in mzuzu city peri-urban community compared to blantyre urban community in surface pit latrine malawi top layer	2023-12-10	v3	1 / 32	pending	No
1069	amnon	high in surface top layer compared to bottom bottom layer in pit latrine malawi	2023-12-10	v3	1 / 56	pending	No
1069	amnon	high in bottom bottom layer compared to surface top layer in pit latrine malawi	2023-12-10	v3	1 / 74	pending	No
1069	amnon	common surface, pit latrine, malawi, top layer	2023-12-10	v3	1 / 126	pending	No
1069	amnon	common bottom, pit latrine, malawi, bottom layer	2023-12-10	v3	1 / 142	pending	No

Problems / suggestions? Please visit the dbBact forum