Experiment ID: 102

Field Description
nameoral microbiome in hiv-associated periodontitis
srasrp079702
datamd5185734e4343b0f830c6dbba4b42b4af5
mapmd5dbe41c67e5bb528881817fdce7e92c91

Annotations for experiment:

term enrichment score
TermScore
cheek0.384615
atlanta0.333333
LOWER IN cheek0.235294
LOWER IN hiv infection0.088889
LOWER IN dentition0.081081
hiv infection0.075472
LOWER IN periodontitis0.058824
periodontitis0.047619
LOWER IN saliva0.046875
mouth0.040000
dentition0.037209
saliva0.014440
LOWER IN control0.004518
control0.004418
united states of america0.003333
homo sapiens0.002591
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN cheek0.333333
cheek0.333333
atlanta0.200000
LOWER IN hiv infection0.058824
LOWER IN dentition0.047619
hiv infection0.047619
LOWER IN periodontitis0.043478
periodontitis0.032258
LOWER IN saliva0.025641
mouth0.020408
dentition0.019608
saliva0.007519
LOWER IN control0.002278
control0.002227
united states of america0.001669
homo sapiens0.001297
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
atlanta1.000000
united states of america1.000000
mouth1.000000
cheek0.454545
dentition0.363636
LOWER IN dentition0.272727
LOWER IN saliva0.272727
LOWER IN control0.272727
control0.272727
saliva0.181818
LOWER IN cheek0.181818
LOWER IN hiv infection0.181818
hiv infection0.181818
periodontitis0.090909
LOWER IN periodontitis0.090909
Number of experiments associating the term to the sequence
TermScore
homo sapiens1.000000
atlanta1.000000
united states of america1.000000
saliva1.000000
LOWER IN dentition1.000000
LOWER IN cheek1.000000
mouth1.000000
dentition1.000000
LOWER IN saliva1.000000
LOWER IN control1.000000
periodontitis1.000000
cheek1.000000
control1.000000
LOWER IN hiv infection1.000000
LOWER IN periodontitis1.000000
hiv infection1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
102amnon high in hiv infection compared to control in homo sapiens atlanta united states of america cheek mouth 2017-04-04v41 / 2approvedNo
102amnon high in hiv infection compared to control in homo sapiens atlanta united states of america dentition mouth 2017-04-04v41 / 4approvedNo
102amnon high in control compared to periodontitis in homo sapiens atlanta united states of america mouth 2017-04-04v41 / 7approvedNo
102amnon high in control compared to hiv infection in homo sapiens atlanta united states of america cheek mouth 2017-04-04v41 / 15approvedNo
102amnon high in control compared to hiv infection in homo sapiens atlanta united states of america dentition mouth 2017-04-04v41 / 18approvedNo
102amnonlower in teeth compared to cheeks, saliva ( high in saliva cheek compared to dentition in homo sapiens atlanta united states of america mouth )2017-04-03v41 / 37approvedNo
102amnonlower in saliva compared to teeth, cheek ( high in dentition cheek compared to saliva in homo sapiens atlanta united states of america mouth )2017-04-03v41 / 39approvedNo
102amnonhigher in cheeks compared to teeth, saliva ( high in cheek compared to saliva dentition in homo sapiens atlanta united states of america mouth )2017-04-03v41 / 41approvedNo
102amnon high in periodontitis compared to control in homo sapiens atlanta united states of america mouth 2017-04-04v41 / 53approvedNo
102amnonhigher in teeth compared to cheeks, saliva ( high in dentition compared to saliva cheek in homo sapiens atlanta united states of america mouth )2017-04-03v41 / 63approvedNo
102amnonhigher in saliva compared to teeth, cheek ( high in saliva compared to dentition cheek in homo sapiens atlanta united states of america mouth )2017-04-03v41 / 65approvedNo

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