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Experiment ID: 1006

Field	Description
name	host genetics and environment shape the composition of the gastrointestinal microbiome in nonhuman primates
sra	prjna772263
doi	https://doi.org/10.1128/spectrum.02139-22
datamd5	f919d5f31a726925c7c16905fb42f6ac
mapmd5	5d429ae6c45775bfc5c24e74871e4daf

Annotations for experiment:

term enrichment score

Term	Score
bethesda	0.666667
state of maryland	0.400000
pig tailed macaque monkey	0.333333
sabaeus monkey	0.333333
chlorocebus pygerythrus	0.333333
macaca nemestrina	0.285714
rhesus macaque	0.285714
chlorocebus sabaeus	0.285714
vervet monkey	0.250000
macaca mulatta	0.166667
monkey	0.105263
captive	0.060606
research facility	0.010417
united states of america	0.006689
feces	0.004587

Fraction of dbbact annotations with this term covered by the query

Term	Score
bethesda	0.500000
pig tailed macaque monkey	0.500000
sabaeus monkey	0.500000
chlorocebus pygerythrus	0.500000
macaca nemestrina	0.333333
rhesus macaque	0.333333
chlorocebus sabaeus	0.333333
state of maryland	0.250000
vervet monkey	0.250000
macaca mulatta	0.125000
monkey	0.055556
captive	0.031250
research facility	0.005236
united states of america	0.003356
feces	0.002299

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
united states of america	1.000000
research facility	1.000000
state of maryland	1.000000
monkey	1.000000
captive	1.000000
bethesda	1.000000
macaca nemestrina	0.250000
pig tailed macaque monkey	0.250000
macaca mulatta	0.250000
rhesus macaque	0.250000
chlorocebus sabaeus	0.250000
sabaeus monkey	0.250000
vervet monkey	0.250000
chlorocebus pygerythrus	0.250000

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
united states of america	1.000000
research facility	1.000000
state of maryland	1.000000
monkey	1.000000
captive	1.000000
macaca nemestrina	1.000000
bethesda	1.000000
pig tailed macaque monkey	1.000000
macaca mulatta	1.000000
rhesus macaque	1.000000
chlorocebus sabaeus	1.000000
sabaeus monkey	1.000000
vervet monkey	1.000000
chlorocebus pygerythrus	1.000000

Search:

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
1006	amnon	dominant feces, united states of america, research facility, macaca mulatta, state of maryland, monkey, captive, bethesda, rhesus macaque	2023-01-09	v4	1 / 9	approved	No
1006	amnon	dominant feces, united states of america, research facility, state of maryland, monkey, vervet monkey, captive, bethesda, chlorocebus pygerythrus	2023-01-08	v4	1 / 12	approved	No
1006	amnon	dominant feces, united states of america, research facility, state of maryland, monkey, captive, macaca nemestrina, bethesda, pig tailed macaque monkey	2023-01-08	v4	1 / 13	approved	No
1006	amnon	dominant feces, united states of america, research facility, state of maryland, monkey, captive, chlorocebus sabaeus, bethesda, sabaeus monkey	2023-01-08	v4	1 / 18	approved	No
1006	amnon	common feces, united states of america, research facility, state of maryland, monkey, vervet monkey, captive, bethesda, chlorocebus pygerythrus	2023-01-08	v4	1 / 222	approved	No
1006	amnon	common feces, united states of america, research facility, state of maryland, monkey, captive, chlorocebus sabaeus, bethesda, sabaeus monkey	2023-01-08	v4	1 / 282	approved	No
1006	amnon	common feces, united states of america, research facility, macaca mulatta, state of maryland, monkey, captive, bethesda, rhesus macaque	2023-01-09	v4	1 / 318	approved	No
1006	amnon	common feces, united states of america, research facility, state of maryland, monkey, captive, macaca nemestrina, bethesda, pig tailed macaque monkey	2023-01-08	v4	1 / 514	approved	No

Showing 1 to 8 of 8 entries

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