dbBact

This is the development server

Experiment ID: 1003

Field	Description
name	alterations in the gut bacterial microbiome in people with type 2 diabetes mellitus and diabetic retinopathy
sra	prjna646010
doi	https://doi.org/10.1038/s41598-021-82538-0
datamd5	a657dc3e9dd70580e381b2c00fb01a08
mapmd5	2353c3eecc27b1401c984f25cebc3339

Annotations for experiment:

term enrichment score

Term	Score
hyderabad	0.666667
LOWER IN type 2 diabetes mellitus	0.222222
type 2 diabetes mellitus	0.200000
india	0.153846
LOWER IN control	0.009091
control	0.008889
homo sapiens	0.005277
feces	0.004608

Fraction of dbbact annotations with this term covered by the query

Term	Score
hyderabad	0.500000
LOWER IN type 2 diabetes mellitus	0.200000
type 2 diabetes mellitus	0.166667
india	0.083333
LOWER IN control	0.004630
control	0.004525
homo sapiens	0.002646
feces	0.002309

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
india	1.000000
hyderabad	1.000000
control	0.250000
LOWER IN type 2 diabetes mellitus	0.250000
type 2 diabetes mellitus	0.250000
LOWER IN control	0.250000

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
homo sapiens	1.000000
india	1.000000
hyderabad	1.000000
control	1.000000
LOWER IN type 2 diabetes mellitus	1.000000
type 2 diabetes mellitus	1.000000
LOWER IN control	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
1003	amnon	high in type 2 diabetes mellitus compared to control in feces homo sapiens india hyderabad	2022-12-31	v3	1 / 2	approved	No
1003	amnon	high in control compared to type 2 diabetes mellitus in feces homo sapiens india hyderabad	2022-12-31	v3	1 / 9	approved	No
1003	amnon	dominant feces, homo sapiens, india, hyderabad	2022-12-31	v3	1 / 18	approved	No
1003	amnon	common feces, homo sapiens, india, hyderabad	2022-12-31	v3	1 / 64	approved	No

Problems / suggestions? Please visit the dbBact forum