dbBact

This is the development server

Experiment ID: 100

Field	Description
name	biogeographic patterns in below-ground diversity in new york city's central park are similar to those observed globally
sra	erp006161
qiita	2104
datamd5	1df1cb1da3b5a6ad5f8d26d4ea4222d8
mapmd5	821ce906609fe5b5bdcd93748f91a0f7

Annotations for experiment:

term enrichment score

Term	Score
central park	0.666667
park	0.500000
ph	0.466667
urban biome	0.400000
LOWER IN ph<6	0.266667
new york city	0.250000
ph<5.5	0.181818
LOWER IN ph>5.5	0.181818
LOWER IN ph<7	0.181818
LOWER IN ph>7	0.181818
ph>5, ph<6.5	0.181818
LOWER IN ph>6.5	0.181818
ph<6	0.166667
LOWER IN ph>6	0.166667
ph>6	0.166667
ph>7	0.166667
ph<5	0.153846
LOWER IN ph>5	0.153846
LOWER IN ph<5	0.153846
ph 6-7	0.117647
soil	0.019417

Fraction of dbbact annotations with this term covered by the query

Term	Score
central park	0.500000
ph<5.5	0.500000
LOWER IN ph>5.5	0.500000
LOWER IN ph<7	0.500000
LOWER IN ph>7	0.500000
ph>5, ph<6.5	0.500000
LOWER IN ph>6.5	0.500000
ph	0.333333
ph<6	0.333333
LOWER IN ph>6	0.333333
park	0.333333
ph>6	0.333333
LOWER IN ph<6	0.333333
ph>7	0.333333
urban biome	0.250000
ph<5	0.250000
LOWER IN ph>5	0.250000
LOWER IN ph<5	0.250000
new york city	0.142857
ph 6-7	0.125000
soil	0.009804

Fraction of annotations for the query sequences containing the term

Term	Score
park	1.000000
soil	1.000000
urban biome	1.000000
new york city	1.000000
central park	1.000000
ph	0.777778
LOWER IN ph<6	0.222222
ph<6	0.111111
LOWER IN ph>6	0.111111
ph>6	0.111111
ph<5.5	0.111111
LOWER IN ph>5.5	0.111111
ph<5	0.111111
LOWER IN ph>5	0.111111
ph>7	0.111111
LOWER IN ph<7	0.111111
ph 6-7	0.111111
LOWER IN ph>7	0.111111
ph>5, ph<6.5	0.111111
LOWER IN ph<5	0.111111
LOWER IN ph>6.5	0.111111

Number of experiments associating the term to the sequence

Term	Score
ph	1.000000
ph<6	1.000000
LOWER IN ph>6	1.000000
park	1.000000
soil	1.000000
urban biome	1.000000
new york city	1.000000
central park	1.000000
ph>6	1.000000
LOWER IN ph<6	1.000000
ph<5.5	1.000000
LOWER IN ph>5.5	1.000000
ph<5	1.000000
LOWER IN ph>5	1.000000
ph>7	1.000000
LOWER IN ph<7	1.000000
ph 6-7	1.000000
LOWER IN ph>7	1.000000
ph>5, ph<6.5	1.000000
LOWER IN ph<5	1.000000
LOWER IN ph>6.5	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
100	amnon	high in ph ph>5, ph<6.5 compared to ph<5 ph>6.5 in park soil urban biome new york city central park	2017-04-03	v4	1 / 1	approved	No
100	amnon	dominant park, soil, urban biome, new york city, central park	2017-04-03	v4	1 / 1	approved	No
100	amnon	high in ph ph 6-7 compared to ph>7 ph<6 in park soil urban biome new york city central park	2017-04-03	v4	1 / 126	approved	No
100	amnon	common park, soil, urban biome, new york city, central park	2017-04-03	v4	1 / 685	approved	No
100	amnon	high in ph ph>7 compared to ph<7 in park soil urban biome new york city central park	2017-04-03	v4	1 / 918	approved	No
100	amnon	high in ph ph<5 compared to ph>5 in park soil urban biome new york city central park	2017-04-03	v4	1 / 1451	approved	No
100	amnon	high in ph ph<5.5 compared to ph>5.5 in park soil urban biome new york city central park	2017-04-03	v4	1 / 4262	approved	No
100	amnon	high in ph ph>6 compared to ph<6 in park soil urban biome new york city central park	2017-04-03	v4	1 / 5365	approved	No
100	amnon	high in ph ph<6 compared to ph>6 in park soil urban biome new york city central park	2017-04-03	v4	1 / 5770	approved	No

Problems / suggestions? Please visit the dbBact forum